PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0028s0194.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 153aa    MW: 17179.5 Da    PI: 7.5014
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0028s0194.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32e-065578326
                          S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                          ++lC  f++tG C++ + C+  H+
  Sphfalx0028s0194.1.p 55 RALCAEFMQTGVCRFRNHCNSFHP 78
                          79*****************97775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.58E-16453No hitNo description
PfamPF062204.7E-10538IPR013085Zinc finger, U1-C type
PROSITE profilePS501038.6625280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MPPHKYYCDY CDKQFYDTPA SRKRHLKGIS HQRAKKQWFD SFKEGEPLLN LDGERALCAE  60
FMQTGVCRFR NHCNSFHPNW PLPVQFGVSA AGYPVAGVVG TAWTAHVPEV DNISNFSRPE  120
LAVASVLERN LPPSLCPPPE GGYHPPPWID WG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001755445.13e-41predicted protein
TrEMBLA9RMS83e-41A9RMS8_PHYPA; Predicted protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-18C3H family protein